PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 42817
Common NameMICPUCDRAFT_42817
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 950aa    MW: 99997.3 Da    PI: 7.8269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
42817genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05132154123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C+ Cg++F +   L rH  tH
    42817 132 HECETCGRVFASAPALARHVATH 154
              78******************999 PP

2zf-C2H214.30.00012160183123
              EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
              ++C  C+k+F +   L rH  + H
    42817 160 FVCAACSKRFATAAALARHRANvH 183
              89*****************99877 PP

3zf-C2H211.20.0012194216123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C  Cgk++ +  n+++H  ++
    42817 194 FTCRSCGKRYLDAANFVKHKLRC 216
              89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003557.0E-4132154IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.69E-10132179No hitNo description
PROSITE profilePS5015711.863132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-6147179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.026160183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388160183IPR007087Zinc finger, C2H2
PROSITE patternPS000280162183IPR007087Zinc finger, C2H2
SMARTSM0035598194214IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 950 aa     Download sequence    Send to blast
MAGATHSISS SSLDGGVGGG VGGGSGRTSN ASSLSRAGSR QGSQGSRGSS RGSLSGGEIE  60
PARGGDGGGA AAAARGGVVA GGFAARRRLP GRPPGGGGPR AASIGPQPPQ PRPPQMVERR  120
RPRDGLKRSG GHECETCGRV FASAPALARH VATHEAGMPF VCAACSKRFA TAAALARHRA  180
NVHGKAVGDG EEYFTCRSCG KRYLDAANFV KHKLRCARQD EMEASTRRGE DVAAGGAGSP  240
RAPRRGRDGR RFVDINAAAE RDTHDFGDED EDEDDMMEYY SGASDDDGAS PSRKKSSHPL  300
QRPARRVDGG GVFSGASSTG SGNNASGNKQ GGGSPGKTIW SSAGSRSRKS KEEEERMRRK  360
RLGLPPPPKI LDEQTKAKAR MSRKEHERAL AEEARKKADI ERKEKEMHLR LLQQRQIFHN  420
QLLEEEAHRR NIGMDVDAEI IRSGVDGSLP KYGPEMALEL AKRLAREEEN AANNTAAKEK  480
EAKKKKGEEE NAAAEEAAKK MAAATLEEEK KPEPEPAAAA GAAREGETAR EGETSTDAKE  540
AEGASAAAAN ADDDGTTPAS DATTATEPAT EPATEPATEG EISAEPAEPA AAANSPSKVD  600
VGGPIDPQLE RKGFKGVSLK LAEKPPLPDA AGGGGRLKKG FLGGVLGGDK KSASASETRL  660
PVLGSGAPTK ERKRSFDPAA TRRANSDSNL LHAADYAGGD RVAEPRKSHV QRMVEAAERD  720
ATETLLGKMR LEAEKAEAAF GGWRASEKPR AGRFAVGAWD RYERDLEEER DPYFVKWCKA  780
RGIPKAEDYD GAERTRVFCA QREALWHAGD HDPIPEDTEM TNGLAVIDLV KLRGEVEKVL  840
EKGGDVGDVQ LPGFNRPLKS LNGSSTSPTS VAGARHSAAA SASNGDWSTK PTPTPTPAPK  900
PAEKTRERPG AASRVKVIRV VSDDSDEDSA GEAEERRDEG DAGRSAEAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18592RRRLPGRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003063505.10.0predicted protein
TrEMBLC1N6B60.0C1N6B6_MICPC; Predicted protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]